ID |
Resol. |
AA |
Chain |
PDB Res.Nr. |
Surplus |
Confirmed by |
ALTLOC Probl. |
Repair |
Exp. Data |
Assess. |
Comment |
E-Dens. |
Cryst. Neigh. |
Distance Violation |
2WLG | 1.90 | TYR | A | 200 | 17.7 | Y | Y | | | Y? | EDS | + | extreme overlap with crys. TYR A 200 |
3F1P | 1.17 | LEU | A | 332 | 17.6 | Y | Y | | | Y? | PDB|SF | + | extreme overlap with crys. LEU A 332 |
2ZZ7 | 1.58 | PHE | A | 100 | 12.4 | | Y | 0.61Å CZ <-> PHE A 100 CZ | A<->A | | EDS | + | |
3FDE | 1.41 | GLU | B | 523 | 8.9 | Y? | Y | 1.17Å OE1 <-> GLU B 523 OE2 | A<->A | | PDB|SF | + | |
3DGI | 1.95 | GLU | B | 292 | 7.9 | | | 0.91Å OE2 <-> ARG B 296 NH1 | A<->A | | PDB|SF | + | |
3H9E | 1.72 | HIS | B | 275 | 6.6 | | Y | 0.34Å NE2 <-> HIS B 275 NE2 | A<->A | | PDB|SF | + | |
3DJZ | 1.82 | ASP | A | 74 | 7.4 | | Y | 1.04Å OD2 <-> GLU A 62 OE1 | | Y? | PDB|SF | + | ALTLOCed vs. not ALTLOCed |
3DGI | 1.95 | ARG | B | 296 | 7.1 | Y | | 0.91Å NH1 <-> GLU B 292 OE2 | A<->A | | PDB|SF | + | |
2ZUR | 1.80 | GLN | X | 158 | 6.7 | Y | Y | 1.24Å OE1 <-> GLN X 158 NE2 | | | PDB|SF | + | |
3H9E | 1.72 | HIS | B | 275 | 6.6 | | Y | 1.10Å NE2 <-> HIS B 275 NE2 | A<->A | | PDB|SF | + | |
3HUT | 1.93 | ARG | A | 218 | 6.5 | Y | Y | | | | PDB|SF | + | |
3G5H | 1.40 | GLU | A | 41 | 6.4 | | Y | 1.65Å OE1 <-> GLU A 41 OE1 | A<->A | | EDS | + | |
3DJZ | 1.82 | GLU | A | 62 | 6.4 | Y | Y | | | | PDB|SF | + | not ALTLOCed vs. ALTLOCed |
3DJZ | 1.82 | GLU | A | 62 | 6.4 | Y | Y | | | Y? | PDB|SF | + | not ALTLOCed vs. ALTLOCed |
3FWK | 1.20 | LYS | A | 102 | 5.9 | Y? | Y | 0.85Å CE <-> LYS A 203 CD | A<->A | | PDB|SF | + | |
2WLC | 1.95 | TYR | A | 6 | 5.5 | Y | Y | | | | EDS | + | |
2ZYH | 1.83 | GLU | A | 194 | 5.1 | Y | | | | | EDS | + | |
2W2T | 1.95 | TYR | A | 64 | 5.1 | Y | Y | | A<->A | | EDS | + | clash crys. TYR 64 |
2VXQ | 1.90 | LYS | H | 209 | 5.1 | Y | Y | 1.87Å CE <-> LYS H 209 CE | | | PDB|SF | + | |
2ZGA | 1.65 | TRP | A | 42 | 5.0 | | | 2.29Å CZ <-> PRO A 44 N | | | PDB|- | na | density could not be loaded |
3EY1 | 1.60 | GLU | A | 154 | 4.9 | Y | Y | | | | EDS | + | clash with crys. GLU 154, ASN 152 |
3HFO | 1.30 | ARG | B | 70 | 4.6 | Y | Y | 1.87Å NH2 <-> ARG B 69 NE | | | PDB|SF | + | |
| | | | | | | Y | 2.22Å OD2 <-> GLU X 123 OE1 | | | PDB|SF | | |
3H46 | 1.75 | ASP | O | 284 | 4.6 | Y? | | 2.23Å OD1 <-> HIS O 126 NE2 | | | PDB|SF | + | |
3CFN | 1.87 | GLU | A | 92 | 4.6 | Y | | 2.40Å OE2 <-> GLU A 72 CG | A<->A | | PDB|SF | + | |
3HOI | 1.55 | LYS | A | 211 | 4.2 | Y | Y | 1.20Å NZ <-> LYS A 211 NZ | A<->A | | EDS | + | |
3FXG | 1.90 | ASN | C | 348 | 4.2 | Y | | | | Y | EDS | + | |
3GI7 | 1.85 | ASN | B | 47 | 4.1 | | Y | 0.85Å ND2 <-> ASN B 47 ND2 | A<->A | | EDS | + | |
3BYB | 1.63 | GLU | C | 51 | 4.0 | Y | Y | | | | PDB|SF | + | |
| | | | | | | Y | 2.20Å OD1 <-> GLN B 75 NE2 | A<->A | | | | |
3GRN | 1.70 | ASN | A | 77 | 3.9 | Y | | 2.28Å ND2 <-> GLN B 75 OE1 | A<->A | | PDB|SF | + | |
3G6K | 1.35 | ASP | A | 238 | 3.9 | Y | | | | Y? | EDS | + | |
3F02 | 1.80 | PHE | B | 89 | 3.9 | Y | | | | Y? | PDB|SF | + | no density for ring |
3DE4 | 1.80 | TYR | X | 61 | 3.9 | Y | B | | | Y? | PDB|SF | + | |
2VPU | 1.90 | ASP | A | 138 | 3.9 | Y | | 1.78Å OD1 <-> ASP A 140 N | | | PDB|SF | + | |
3GR2 | 1.80 | LYS | A | 332 | 3.8 | Y | | 1.72Å NZ <-> GLN A 361 OE1 | | | PDB|SF | + | |
3H46 | 1.75 | GLU | X | 123 | 3.7 | Y | Y | 2.22Å OE1 <-> ASP O 284 OD2 | | | PDB|SF | + | basically no density |
3H46 | 1.75 | GLU | O | 460 | 3.7 | Y | | 2.28Å OE2 <-> ASP O 457 OD2 | | | PDB|SF | + | basically no density |
3FXG | 1.90 | ASN | H | 348 | 3.7 | Y | | | | Y | EDS | + | |
3ECV | 1.90 | HIS | D | 80 | 3.7 | Y | | 2.68Å CE1 <-> HIS D 46 CD2 | | | PDB|SF | + | |
2ZTX | 1.72 | ASN | A | 139 | 3.7 | Y | Y | 1.85Å OD1 <-> ASN A 139 OD1 | | | PDB|SF | + | |
3G25 | 1.90 | GLU | D | 256 | 3.5 | Y | | | | Y? | PDB|SF | + | no density for ALTLOCs A and B |
3DE0 | 1.90 | TYR | X | 61 | 3.5 | Y | Y | | | Y | PDB|SF | + | |
2ZYZ | 1.70 | ASP | B | 70 | 3.5 | Y | | | | | PDB|SF | + | |
3GY1 | 1.60 | ASN | A | 341 | 3.4 | Y | | | | Y? | PDB|SF | + | |
3F9Q | 1.90 | ASP | A | 24 | 3.4 | Y | | | | Y | PDB|SF | + | |
3DPS | 1.80 | GLU | F | 2196 | 3.4 | | | | | | PDB|SF | r | unusual rotamer (0% as accord. to MolProbity) |
3DPS | 1.80 | GLU | A | 1196 | 3.4 | | | | | | PDB|SF | r | unusual rotamer (0.3% as accord. to MolProbity) |
3FZY | 1.95 | ASP | B | 3615 | 3.3 | | | | | | PDB|- | na | density could not be loaded |
3FXG | 1.90 | ASN | B | 348 | 3.3 | Y | | | | Y | EDS | + | |
3DDZ | 1.70 | GLN | X | 103 | 3.3 | Y | Y | 1.98Å OE1 <-> ASN X 5 ND2 | | Y | PDB|SF | + | |
3DDO | 1.50 | GLU | E | 5196 | 3.3 | Y | | | | | PDB|SF | r | unusual rotamer (0.4% as accord. to MolProbity) |
3DDO | 1.50 | GLU | C | 3196 | 3.3 | | | | | | PDB|SF | r | unusual rotamer (0.2% as accord. to MolProbity) |
3D0A | 1.80 | MET | B | 133 | 3.3 | | | 2.05Å SD <-> CYS B 141 SG | A<->A | | PDB|SF | + | |
2W9S | 1.80 | ASP | D | 120 | 3.3 | | | 2.14Å OD2 <-> GLN D 17 N | | | PDB|SF | + | unspecific density |
2W93 | 1.60 | ASP | C | 529 | 3.3 | Y | | 2.37Å OD2 <-> SER C 531 OG | | Y? | EDS | + | |
2W3P | 1.50 | GLN | A | 456 | 3.3 | Y | Y | 0.75Å OE1 <-> ARG A 453 NH1 | | | PDB|SF | + | |
2W3P | 1.50 | ARG | A | 453 | 3.3 | Y | Y | 0.75Å NH1 <-> GLN A 456 OE1 | | | PDB|SF | + | |
3HJR | 1.65 | ASN | A | 166 | 3.2 | Y | Y | 2.38Å OD1 <-> LYS A 238 N | | Y | PDB|SF | + | |
3H73 | 1.70 | ASP | B | 385 | 3.2 | Y | | 2.53Å OD2 <-> THR B 389 OG1 | | | PDB|SF | + | |
3H46 | 1.75 | ASP | O | 457 | 3.2 | Y | | 2.28Å OD2 <-> GLU O 460 OE2 | | | PDB|SF | + | |
3FLC | 1.85 | ASP | X | 183 | 3.2 | | | 2.44Å OD2 <-> SER X 185 OG | | | PDB|SF | + | |
3FJV | 1.90 | ASN | A | 85 | 3.2 | Y | | 1.30Å OD1 <-> ASP A 82 OD1 | | | EDS | + | ALTLOC A vs. not ALTLOCed ASP |
3DE0 | 1.90 | GLN | X | 103 | 3.2 | Y | Y | 1.94Å OE1 <-> ASN X 5 ND2 | | | PDB|SF | + | |
3D3B | 1.30 | THR | J | 32 | 3.2 | | | 2.06Å CG2 <-> THR J 62 OG1 | | | EDS | + | ALTLOC A vs. not ALTLOCed THR |
3CZ1 | 1.50 | ASP | A | 60 | 3.2 | | | 2.44Å OD2 <-> ASN A 64 ND2 | | | PDB|- | na | density could not be loaded |
2ZO3 | 1.70 | ASP | H | 125 | 3.2 | | | 2.31Å OD2 <-> THR H 128 OG1 | | | EDS | + | |
| | | | | | | | 2.64Å OE2 <-> TYR C 157 OH | | | | | |
2JJB | 1.90 | GLU | C | 155 | 3.2 | Y | | 2.89Å CD <-> GLU C 155 N | | | EDS | + | |
3I10 | 1.35 | ASN | A | 31 | 3.1 | | Y | 1.70Å OD1 <-> ASN A 31 OD1 | A<->A | | PDB|- | na | density could not be loaded |
| | | | | | Y | | 2.56Å OE2 <-> ASP X 457 OD2 | | | | | |
3H46 | 1.75 | GLU | X | 460 | 3.1 | Y | Y | 2.29Å OE2 <-> GLU O 217 OE1 | | | PDB|SF | + | |
3GRN | 1.70 | GLN | B | 75 | 3.1 | | Y | 2.20Å NE2 <-> ASN A 77 OD1 | A<->A | | PDB|SF | + | |
3GI7 | 1.85 | ASN | A | 47 | 3.1 | | Y | 0.95Å ND2 <-> ASN A 47 ND2 | A<->A | | EDS | + | |
3FYO | 1.90 | PHE | B | 234 | 3.1 | Y | | 1.23Å OE2 <-> LYS B 52 NZ | | | PDB|SF | + | |
3FXG | 1.90 | ASN | E | 348 | 3.1 | Y | | | | Y | EDS | + | |
3FLC | 1.85 | ASP | O | 183 | 3.1 | | | 2.42Å OD2 <-> SER O 185 OG | | | PDB|SF | + | |
3EA6 | 0.92 | ASP | A | 185 | 3.1 | Y | | 2.46Å OD2 <-> ASP A 186 OD1 | | | PDB|SF | + | |
3EA3 | 1.78 | GLU | A | 108 | 3.1 | | | | | | EDS | o | |
3EA1 | 1.75 | GLU | B | 108 | 3.1 | | | | | | EDS | o | |
3EA1 | 1.75 | ASN | A | 243 | 3.1 | Y | | | | | EDS | + | |
2W8B | 1.86 | ASP | B | 418 | 3.1 | | | 2.21Å OD2 <-> GLU B 22 OE1 | | | EDS | + | insec. dens. for ASP |
| | | | | | | Y | 2.37Å NE2 <-> LYS B 564 O | | | | | |
2W59 | 1.75 | GLN | A | 434 | 3.1 | | Y | 2.36Å OE1 <-> ALA B 566 N | | | EDS | + | insec. dens. for GLN and crys. neighb. |
| | | | | | | | 2.65Å OD2 <-> HIS B 93 N | | | | | |
2W3E | 1.60 | ASP | B | 90 | 3.1 | | | 2.79Å OD2 <-> GLN B 92 N | | | PDB|SF | + | three H-bridges for OD2?! |
3HNN | 1.80 | ASP | D | 187 | 3.0 | Y | | 2.59Å OD2 <-> SER D 238 OG | | Y | PDB|SF | + | move SER for repair, THR 237 bad dens |
3H47 | 1.90 | CYS | A | 45 | 3.0 | Y | Y | 2.04Å SG <-> CYS A 14 SG | | | PDB|SF | + | |
3GN6 | 1.80 | GLU | A | 234 | 3.0 | | | | | | PDB|- | na | density could not be loaded |
3G5F | 1.40 | GLU | A | 41 | 3.0 | | Y | 2.21Å OE1 <-> GLU A 41 OE1 | A<->A | | PDB|SF | + | |
3G25 | 1.90 | ASP | C | 181 | 3.0 | | | 2.54Å OD2 <-> SER C 183 OG | | | PDB|SF | + | |
3FXG | 1.90 | ASN | A | 348 | 3.0 | Y | | | | Y | EDS | + | |
3FV3 | 1.85 | ASP | F | 130 | 3.0 | Y | | | | | PDB|SF | + | GLY F 133 N (bad dens) |
3F5Q | 1.76 | GLU | B | 49 | 3.0 | Y | | 1.46Å OE2 <-> ARG B 52 NH2 | | | EDS | + | |
3EA3 | 1.78 | GLU | B | 108 | 3.0 | | | | | | EDS | o | |
3EA2 | 1.95 | GLU | B | 108 | 3.0 | | | | | | EDS | o | |
3EA2 | 1.95 | GLU | A | 108 | 3.0 | | | | | | EDS | o | |
3EA1 | 1.75 | GLU | A | 108 | 3.0 | | | | | | EDS | o | |
3DDZ | 1.70 | TYR | X | 61 | 3.0 | Y | | | | Y | PDB|SF | + | |
3CFM | 1.60 | GLU | A | 92 | 3.0 | | | 1.25Å OE2 <-> HIS A 90 NE2 | A<->A | | EDS | + | |
2ZZ6 | 1.66 | ARG | B | 66 | 3.0 | Y | | | | | EDS | + | |